GBSEQGET   (1) manpage
GBSEQGET
1
2003-04-27
NCBI
NCBI Tools User's Manual
  • NAME
      gbseqget - format sequences from GenBank as an XML GBSet
  • SYNOPSIS
      gbseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o filename] [-v]
  • DESCRIPTION
      gbseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML GBSet document.
  • OPTIONS
      A summary of options is included below.
      -
      Print usage message
      -d filename
      Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line)
      -i filename
      Input file name for GI list (default = stdin)
      -m n/p/b
      Molecule type:
      n
      Nucleotide (default)
      p
      Protein
      b
      Both
      -n
      Return only new records (for which the given GI refers to an old version)
      -o filename
      Output file name for the XML GBSet (default = stdout)
      -v
      Fetch SNP Variations
  • AUTHOR
      The National Center for Biotechnology Information.
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